- Nov 19, 2019
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Alfen, T. van (Tanja) authored
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Alfen, T. van (Tanja) authored
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Alfen, T. van (Tanja) authored
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Vriezen, E.C. (Emma) authored
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Haak, R. (Romeo) authored
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Haak, R. (Romeo) authored
Made a small comparison of the outputs and made sure that the strategy (algorithm) that is to be used can be chosen here.
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Haak, R. (Romeo) authored
It is integrated with the existing framework
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Haak, R. (Romeo) authored
line is important such that it overrides the find_alignment method in Alignment_Strategy
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Haak, R. (Romeo) authored
Put a general class that is supposed to be an interface to resemble the strategy pattern. The now existing algorithms implement the find_alignment method
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- Nov 18, 2019
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Haak, R. (Romeo) authored
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Luttikholt, T.J. (Thijs) authored
Fixed some bugs and rewrote the code in such a way that the pointer class is no longer needed. Since this class did not have a lot of functionality.
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Alfen, T. van (Tanja) authored
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Luttikholt, T.J. (Thijs) authored
I modified several things about the Needleman-Wunsch implementation. These changes made the code more readable and also shorter. It also allowed me to several functions and parameters from the Pointer class. Since those were no longer needed. One primary change is that I have changed the pointer-frame from a list structure to a numpy array. Which allowed for easier operations and allowed me to shorten several lines.
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Haak, R. (Romeo) authored
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Alfen, T. van (Tanja) authored
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Alfen, T. van (Tanja) authored
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Luttikholt, T.J. (Thijs) authored
I have included a dummy accuracy score function. The current version is based on the shadowed attribute of source words. This also means that it will only function properly after this attribute has been assigned to its correct value for every source word.
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- Nov 17, 2019
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Vriezen, E.C. (Emma) authored
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Vriezen, E.C. (Emma) authored
Finalised the algorithm. Only have to update the documentation and format the code (aka make smaller functions).
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- Nov 15, 2019
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Vriezen, E.C. (Emma) authored
Added the new version. Will clean up the code later. Tried testing with other files. Seems to work alright, though there are things going wrong for file 9.
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Vriezen, E.C. (Emma) authored
Added get_difference function in Word classes and started on a new version of my comparison algorithm. However, I will restart next time. I have the idea to work with anchors: words that only occur once in both files will serve as anchors, and the remaining words will only be matched between two sets of anchors.
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Vriezen, E.C. (Emma) authored
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Alfen, T. van (Tanja) authored
I made sure my implementation of the sequence alignment algorithm works with... See merge request !25
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- Nov 14, 2019
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Luttikholt, T.J. (Thijs) authored
I made sure my implementation of the sequence alignment algorithm works with the recently changed strategy of the program. I also improved the implementation, such that it now gives the correct results. Note that while the program does give the correct results, it does not do this in an optimal way yet.
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- Nov 13, 2019
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Vriezen, E.C. (Emma) authored
Analysed the code more and tried to solve the problem of it skipping a word while it should not. Isolated the problem, to be fixed later. Also fixed the shadow_index that is returned by search_locally.
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Alfen, T. van (Tanja) authored
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Alfen, T. van (Tanja) authored
Added self.save_pref initialisation to init to fix 'AttributeError: 'ModelClass' object has no attribute 'save_pref'
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Alfen, T. van (Tanja) authored
Added self.save_pref initialisation to init to fix 'AttributeError: 'ModelClass' object has no attribute 'save_pref'
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- Nov 12, 2019
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Vriezen, E.C. (Emma) authored
Improved code quality of search_locally and added functionality to compare(), both in data_comparer.py. Now the compare() method looks back in time. I manually compared it with the so called true comparison. It goes wrong at two places, which I have noted down and will change another day.
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Alfen, T. van (Tanja) authored
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Alfen, T. van (Tanja) authored
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Vriezen, E.C. (Emma) authored
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Alfen, T. van (Tanja) authored
Sc 75 #bulk load See merge request !21
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Alfen, T. van (Tanja) authored
Sc 80 #full saving options See merge request !20
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Alfen, T. van (Tanja) authored
Sc 80.1 See merge request !19
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Alfen, T. van (Tanja) authored
Sc 76 See merge request !17
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Alfen, T. van (Tanja) authored
Added mistake counter functionality and applied changes to report it in the saved documents. See merge request !16
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- Nov 11, 2019
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Vriezen, E.C. (Emma) authored
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Vriezen, E.C. (Emma) authored
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Nijsen, T authored
Created a new solution concept working with kernels. Did a singllar test and interpreted it to understand what still needs to be adapted.
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